Node 69
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	0	1	T	1
6	0	0.98	0	0.02	C	0.98
7	0.59	0	0.41	0	A	0.59
8	0	0	0	1	T	1
9	0.14	0.25	0.32	0.29	G	0.32
10	0	0.11	0	0.89	T	0.89
11	0	0	0	1	T	1
12	0.92	0.03	0.04	0.01	A	0.92
13	0.02	0	0.98	0	G	0.98
14	1	0	0	0	A	1
15	0.01	0.77	0.01	0.21	C	0.77
16	1	0	0	0	A	1
17	0.55	0	0.44	0	A	0.55
18	0	0.97	0	0.03	C	0.97
19	0	0.06	0	0.94	T	0.94
20	0	0	0	1	T	1
21	0.96	0	0.03	0	A	0.96
22	0	0	1	0	G	1
23	0.98	0.01	0.01	0	A	0.98
24	0.63	0.03	0.3	0.03	A	0.63
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	0.79	0	0.21	0	A	0.79
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	0.81	0	0.19	C	0.81
31	0.94	0.02	0.04	0	A	0.94
32	0.98	0	0.02	0	A	0.98
33	0.44	0.01	0.54	0.01	G	0.54
34	0.04	0.7	0.08	0.18	C	0.7
35	0.21	0.17	0.12	0.49	T	0.49
36	0.07	0.44	0.37	0.12	C	0.44
37	0.07	0	0.93	0	G	0.93
38	0	0	0	1	T	1
39	0.07	0.26	0.06	0.61	T	0.61
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.27	0	0.73	T	0.73
43	0	1	0	0	C	1
44	0	0	1	0	G	1
45	0.02	0.6	0.03	0.35	C	0.6
46	0.45	0	0.54	0	G	0.54
47	0.98	0	0.02	0	A	0.98
48	0.05	0.68	0.05	0.22	C	0.68
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0.07	0.27	0.07	0.6	T	0.6
52	0.02	0.97	0	0.01	C	0.97
53	0.04	0	0.96	0	G	0.96
54	0.11	0.18	0.14	0.57	T	0.57
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	0.98	0	0.02	0	A	0.98
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	0.95	0.02	0.02	0	A	0.95
62	1	0	0	0	A	1
63	0.02	0.6	0.09	0.29	C	0.6
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	0.91	0	0.09	C	0.91
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	0.64	0	0.36	C	0.64
70	0.35	0	0.65	0	G	0.65
71	0	0	0	1	T	1
72	0.28	0.02	0.68	0.02	G	0.68
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	0.44	0	0.56	0	G	0.56
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.03	0.65	0.05	0.27	C	0.65
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0.62	0	0.38	C	0.62
82	0.71	0	0.28	0	A	0.71
83	1	0	0	0	A	1
84	0.12	0.49	0.13	0.26	C	0.49
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0.88	0	0.12	C	0.88
88	0.98	0.01	0.01	0	A	0.98
89	0	0	0	1	T	1
90	0.01	0.87	0.01	0.11	C	0.87
91	0.06	0	0.94	0	G	0.94
92	0.93	0.01	0.06	0	A	0.93
93	0.1	0.59	0.09	0.23	C	0.59
94	0.99	0	0	0	A	0.99
95	1	0	0	0	A	1
96	0	0.7	0	0.3	C	0.7
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	0.99	0	0.01	C	0.99
100	0.8	0.15	0.04	0.02	A	0.8
101	0.97	0	0.03	0	A	0.97
102	0.72	0.01	0.27	0.01	A	0.72
103	0.01	0.09	0.9	0	G	0.9
104	0.9	0.09	0.01	0	A	0.9
105	0.08	0.39	0.08	0.45	T	0.45
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	0.98	0	0.02	C	0.98
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.27	0.04	0.64	0.04	G	0.64
112	0.64	0	0.35	0.01	A	0.64
113	0	0.55	0	0.45	C	0.55
114	0.11	0.07	0.78	0.04	G	0.78
115	0	1	0	0	C	1
116	1	0	0	0	A	1
117	0	0.48	0	0.52	T	0.52
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.11	0.28	0.32	0.29	G	0.32
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0.01	0.3	0.01	0.68	T	0.68
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0.02	0.55	0.02	0.41	C	0.55
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0.01	0	0.99	T	0.99
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.26	0.16	0.2	0.38	T	0.38
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	0.02	0	0.98	0	G	0.98
137	0	0.02	0	0.98	T	0.98
138	0.04	0.27	0.04	0.65	T	0.65
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.33	0	0.66	T	0.66
142	0.01	0.99	0	0	C	0.99
143	0	0	0.99	0	G	0.99
144	0.01	0.85	0.1	0.03	C	0.85
145	0.24	0.03	0.71	0.02	G	0.71
146	0	0	0	1	T	1
147	0.04	0.17	0.11	0.68	T	0.68
148	0.01	0	0.99	0	G	0.99
149	0.97	0.02	0.01	0	A	0.97
150	0.69	0.05	0.23	0.04	A	0.69
151	0.48	0	0.52	0	G	0.52
152	0.82	0.13	0.03	0.02	A	0.82
153	0.08	0.59	0.07	0.26	C	0.59
154	0	0	1	0	G	1
155	0.03	0	0.97	0	G	0.97
156	0.02	0.64	0.02	0.32	C	0.64
157	0.65	0.05	0.26	0.04	A	0.65
158	0.08	0.72	0.03	0.17	C	0.72
159	0.28	0.38	0.17	0.17	C	0.38
160	0.63	0	0.37	0	A	0.63
161	0.4	0.26	0.32	0.02	A	0.4
162	0.28	0.35	0.2	0.17	C	0.35
163	0.5	0.23	0.16	0.1	A	0.5
164	0.95	0.01	0.04	0.01	A	0.95
165	0.75	0.02	0.21	0.02	A	0.75
166	0.05	0.8	0.03	0.12	C	0.8
167	0.11	0.84	0.03	0.03	C	0.84
168	0.56	0.11	0.27	0.07	A	0.56
169	0.95	0	0.05	0	A	0.95
170	0.08	0.79	0.02	0.12	C	0.79
171	0.04	0.61	0.05	0.3	C	0.61
172	0	0.01	0.98	0	G	0.98
173	0.22	0.72	0.03	0.03	C	0.72
174	0.53	0.09	0.31	0.07	A	0.53
175	0	0.9	0	0.09	C	0.9
176	0	0	0	0.99	T	0.99
177	0.11	0.01	0.88	0.01	G	0.88
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.38	0	0.61	T	0.61
181	0.01	0	0.99	0	G	0.99
182	0.96	0	0.01	0.03	A	0.96
183	0.29	0.16	0.5	0.05	G	0.5
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0.05	0.46	0.09	0.4	C	0.46
187	0.99	0.01	0.01	0	A	0.99
188	1	0	0	0	A	1
189	0.01	0.75	0.01	0.23	C	0.75
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	0.76	0	0.24	C	0.76
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0.01	0.56	0.01	0.43	C	0.56
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	0.76	0	0.24	C	0.76
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	0.43	0	0.57	T	0.57
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0.04	0.15	0.08	0.72	T	0.72
205	0	0	1	0	G	1
206	0	0	0	1	T	1
207	0.01	0	0.99	0	G	0.99
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0.09	0	0.91	T	0.91
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	0.96	0	0.04	C	0.96
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0.29	0.19	0.38	0.14	G	0.38
220	0	0	1	0	G	1
221	1	0	0	0	A	1
222	0.8	0.02	0.17	0.02	A	0.8
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0.13	0.28	0.17	0.41	T	0.41
226	0.03	0.84	0.06	0.07	C	0.84
227	0.97	0	0.03	0	A	0.97
228	0.3	0.14	0.35	0.21	G	0.35
229	0	0	1	0	G	1
230	1	0	0	0	A	1
231	0.86	0	0.14	0	A	0.86
232	1	0	0	0	A	1
233	0	0.96	0	0.03	C	0.96
234	0.12	0.28	0.11	0.49	T	0.49
235	0.42	0	0.58	0	G	0.58
236	0	0	0	1	T	1
237	0.04	0.18	0.07	0.7	T	0.7
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0.07	0	0.93	0	G	0.93
241	0	0.02	0.01	0.96	T	0.96
242	0	0	0	0.99	T	0.99
243	0.02	0.45	0.02	0.52	T	0.52
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.22	0.43	0.2	0.16	C	0.43
247	0.16	0.01	0.83	0.01	G	0.83
248	0.58	0.12	0.27	0.03	A	0.58
249	0.01	0.66	0.01	0.32	C	0.66
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	1	0	0	0	A	1
253	0.32	0.1	0.33	0.26	G	0.33
254	0.11	0.67	0.11	0.12	C	0.67
255	0.05	0.69	0.07	0.19	C	0.69
256	0.16	0.01	0.82	0.01	G	0.82
257	0.74	0.09	0.12	0.05	A	0.74
258	0.21	0.18	0.35	0.26	G	0.35
259	0	0.91	0	0.09	C	0.91
260	0	0	0	1	T	1
261	0.3	0.02	0.65	0.03	G	0.65
262	0.98	0	0.02	0	A	0.98
263	0.31	0.31	0.28	0.1	C	0.31
264	0.35	0.17	0.39	0.09	G	0.39
265	0.05	0.76	0.05	0.13	C	0.76
266	0	0.38	0	0.62	T	0.62
267	0.53	0.08	0.27	0.11	A	0.53
268	0	0	1	0	G	1
269	0.99	0	0	0.01	A	0.99
270	0.21	0.03	0.72	0.03	G	0.72
271	0.08	0.42	0.46	0.04	G	0.46
272	0.97	0	0.03	0	A	0.97
273	0.47	0.06	0.43	0.05	A	0.47
274	0.02	0.08	0.87	0.03	G	0.87
275	0.02	0.9	0.06	0.02	C	0.9
276	0.09	0.27	0.04	0.61	T	0.61
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.15	0	0.85	T	0.85
280	0.02	0.97	0.01	0.01	C	0.97
281	0.03	0	0.97	0	G	0.97
282	0.14	0.6	0.06	0.19	C	0.6
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0.05	0	0.95	T	0.95
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0.01	0.61	0.01	0.37	C	0.61
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	0.97	0	0.03	C	0.97
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0.04	0.67	0.03	0.27	C	0.67
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	0.44	0	0.56	0	G	0.56
301	0	0	0	1	T	1
302	0.01	0.01	0	0.98	T	0.98
303	0.01	0.17	0.01	0.81	T	0.81
304	0	0.54	0	0.46	C	0.54
305	0	0	0	1	T	1
306	0.05	0.53	0.17	0.25	C	0.53
307	0.76	0.02	0.08	0.13	A	0.76
308	0.01	0.97	0.01	0.01	C	0.97
309	0.05	0.47	0.04	0.44	C	0.47
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0.05	0.36	0.04	0.55	T	0.55
313	0.14	0.58	0.1	0.18	C	0.58
314	0.98	0	0.02	0	A	0.98
315	0.52	0.13	0.27	0.08	A	0.52
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0.03	0.15	0.03	0.79	T	0.79
322	0	0	1	0	G	1
323	1	0	0	0	A	1
324	0.25	0	0.74	0	G	0.74
325	0.99	0	0.01	0	A	0.99
326	0.06	0.82	0.08	0.04	C	0.82
327	0.21	0.3	0.15	0.35	T	0.35
328	0	1	0	0	C	1
329	0.49	0.01	0.48	0.02	A	0.49
330	0.06	0.2	0.09	0.65	T	0.65
331	0.03	0.77	0.14	0.06	C	0.77
332	1	0	0	0	A	1
333	0.21	0.04	0.7	0.05	G	0.7
334	0.04	0.33	0.5	0.12	G	0.5
335	0	0	0	1	T	1
336	0.14	0.22	0.23	0.41	T	0.41
337	0.27	0.25	0.18	0.31	T	0.31
338	0.82	0	0.18	0	A	0.82
339	0.06	0.62	0.08	0.23	C	0.62
340	0.04	0.07	0.88	0.01	G	0.88
341	1	0	0	0	A	1
342	0.95	0.01	0.04	0	A	0.95
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0.11	0.55	0.12	0.22	C	0.55
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	0.6	0.01	0.38	0.01	A	0.6
349	0.08	0	0.92	0	G	0.92
350	0	0	0	1	T	1
351	0.12	0.03	0.82	0.03	G	0.82
352	0	0	1	0	G	1
353	0	0.35	0	0.65	T	0.65
354	0.32	0.06	0.55	0.07	G	0.55
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0.18	0	0.82	T	0.82
358	0	0	0	1	T	1
359	0	0	0	1	T	1
360	0	0.63	0	0.36	C	0.63
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0.41	0.18	0.17	0.24	A	0.41
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	0.95	0	0.05	C	0.95
367	0.23	0.25	0.44	0.08	G	0.44
368	1	0	0	0	A	1
369	0	0.64	0	0.35	C	0.64
370	0.04	0	0.96	0	G	0.96
371	1	0	0	0	A	1
372	0.91	0	0.09	0	A	0.91
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0.15	0.27	0.41	0.16	G	0.41
376	0	0.01	0	0.99	T	0.99
377	1	0	0	0	A	1
378	0	1	0	0	C	1
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0.11	0.57	0.08	0.24	C	0.57
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	0.35	0	0.65	T	0.65
385	0.26	0.48	0.21	0.06	C	0.48
386	0.41	0.12	0.07	0.4	A	0.41
387	0	0.94	0	0.05	C	0.94
388	0.04	0	0.95	0.01	G	0.95
389	0	0	1	0	G	1
390	0.02	0.29	0.02	0.67	T	0.67
391	0.11	0	0.89	0	G	0.89
392	1	0	0	0	A	1
393	0.01	0.66	0.01	0.31	C	0.66
394	0.56	0.01	0.43	0.01	A	0.56
395	0.99	0	0.01	0	A	0.99
396	0	0.99	0	0.01	C	0.99
397	0	0.99	0	0.01	C	0.99
398	0.32	0.3	0.36	0.02	G	0.36
399	0.52	0.07	0.34	0.07	A	0.52
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.63	0.03	0.31	0.03	A	0.63
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	0.97	0.01	0.01	0	A	0.97
410	0.23	0	0.77	0	G	0.77
411	0.76	0.04	0.18	0.02	A	0.76
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	0.97	0	0.03	0	A	0.97
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0.06	0.32	0.57	0.05	G	0.57
418	0.01	0	0.99	0	G	0.99
419	0	0	0	1	T	1
420	0.04	0.01	0.95	0.01	G	0.95
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	0.04	0.8	0.03	0.14	C	0.8
424	1	0	0	0	A	1
425	0.99	0	0.01	0	A	0.99
426	0.96	0.01	0.03	0	A	0.96
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.14	0.26	0.46	0.13	G	0.46
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0	0.91	0	0.08	C	0.91
433	0.82	0	0.18	0	A	0.82
434	0	0	0	1	T	1
435	0.01	0.73	0.01	0.26	C	0.73
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	1	0	0	0	A	1
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	0.19	0	0.8	T	0.8
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0	0.76	0	0.24	C	0.76
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0.29	0	0.71	T	0.71
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	0.99	0	0	C	0.99
451	0	0.98	0	0.02	C	0.98
452	0	0	0	1	T	1
453	0.64	0.05	0.25	0.06	A	0.64
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.63	0	0.37	C	0.63
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	1	0	0	0	A	1
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGATCATGTTAGACAACTTAGAACAATTCAAGCTCGTTTATCGCGACGGTCGTAAATGGAACCGCTGCGTGGAGGCCATCAACAACATCGACAACATCAAAGATGGCGTGACGCATTCGATTGGCGATTCTCTGGTTTATCGCGTTGAAGACGGCACCAACAAACCAACCGCACTGTTTGAGGGCAACCGCCGCTACTTTGATGTGCATTACTACCTGGAAGGTCAGGAAACTGTTGAGTTTGCCGACAAAGCCGAGCTGACGCTAGAGGAAGCTTATCGCGATGAAACCGACCGCGAGTTTCTCACCGGTCAA---GGTGAGACTCATCAGGTTTACGAAGGCCAAGTGGTGATTTTCGAAAACGACGAAGCGTACCGCTTTCACGGTGACAACCGAGTA------AGAAAAGTGGTGCTCAAAGTGACCATCGAAGATGGCTATTTCCTAAACAAATAA

The most probable DNA sequence without gaps is:
ATGATCATGTTAGACAACTTAGAACAATTCAAGCTCGTTTATCGCGACGGTCGTAAATGGAACCGCTGCGTGGAGGCCATCAACAACATCGACAACATCAAAGATGGCGTGACGCATTCGATTGGCGATTCTCTGGTTTATCGCGTTGAAGACGGCACCAACAAACCAACCGCACTGTTTGAGGGCAACCGCCGCTACTTTGATGTGCATTACTACCTGGAAGGTCAGGAAACTGTTGAGTTTGCCGACAAAGCCGAGCTGACGCTAGAGGAAGCTTATCGCGATGAAACCGACCGCGAGTTTCTCACCGGTCAAGGTGAGACTCATCAGGTTTACGAAGGCCAAGTGGTGATTTTCGAAAACGACGAAGCGTACCGCTTTCACGGTGACAACCGAGTAAGAAAAGTGGTGCTCAAAGTGACCATCGAAGATGGCTATTTCCTAAACAAATAA

The accuracy score for that sequence is 0.851545253863135

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 2.59887659026523e-39.
The natural log of that probability is -88.8457393557813.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
I	1	A	0	9999	
V	0.41	I	0.4012	1.02193419740778	Unreliable
L	0.9644	F	0.0356	27.0898876404494	
D	0.9604	N	0.0196	49	
N	0.55	S	0.44	1.25	Unreliable
L	0.99	A	0	9999	
E	0.9114	D	0.0588	15.5	
Q	1	A	0	9999	
F	1	A	0	9999	
K	0.902776	E	0.038416	23.5	
L	0.381808	P	0.119	3.20847058823529	
V	0.93	I	0.0658	14.1337386018237	
Y	1	A	0	9999	
R	1	A	0	9999	
D	0.47628	N	0.3969	1.2	Unreliable
G	1.01	A	0	9999	
R	0.936	H	0.0291	32.1649484536082	
K	1	A	0	9999	
W	1	A	0	9999	
N	0.8455	K	0.1045	8.09090909090909	
R	1	A	0	9999	
C	1	A	0	9999	
V	0.65	M	0.238	2.73109243697479	
E	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
N	0.5325	D	0.21	2.53571428571429	
N	1	A	0	9999	
I	0.9702	L	0.01	97.02	
D	0.716844	E	0.166098	4.31578947368421	
N	0.99	A	0	9999	
I	1	A	0	9999	
K	0.76824	Q	0.144045	5.33333333333333	
D	0.6804	E	0.1296	5.25	
G	1	A	0	9999	
V	0.99	A	0	9999	
T	0.352	M	0.22464	1.56695156695157	
H	1	A	0	9999	
S	1	A	0	9999	
I	0.99	M	0.01	99	
G	1	A	0	9999	
D	1	A	0	9999	
S	1	A	0	9999	
L	1	A	0	9999	
V	0.9604	A	0.0196	49	
Y	0.99	A	0	9999	
R	0.971388	S	0.008712	111.5	
V	0.71	I	0.2136	3.32397003745318	
E	0.883476	D	0.086427	10.2222222222222	
D	0.36244	N	0.33456	1.08333333333333	Unreliable
G	0.97	D	0.0288	33.6805555555556	
T	0.468	A	0.1872	2.5	
T	0.1638	N	0.13104	1.25	Unreliable
K	0.456	Q	0.20976	2.17391304347826	
P	0.67872	S	0.102078	6.64903309234115	
T	0.7505	I	0.1083	6.92982456140351	
A	0.7056	E	0.181104	3.8961038961039	
L	0.988119	F	0.001782	554.5	
F	0.99	A	0	9999	
E	0.750816	D	0.199584	3.76190476190476	
G	1	A	0	9999	
N	0.9702	K	0.0198	49	
R	1	A	0	9999	
R	1.01	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
D	0.87	E	0.12	7.25	
V	1	A	0	9999	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
E	0.97	D	0.04	24.25	
G	0.99	A	0	9999	
Q	0.52962	H	0.28518	1.85714285714286	
E	1	A	0	9999	
T	0.96	I	0.0267	35.9550561797753	
V	0.5742	I	0.3864	1.4860248447205	Unreliable
E	1	A	0	9999	
F	0.921888	L	0.058014	15.8907849829352	
A	1.01	R	0	9999	
D	0.471772	G	0.2241	2.10518518518519	
K	1	A	0	9999	
A	0.2211	T	0.2144	1.03125	Unreliable
E	0.339808	D	0.266992	1.27272727272727	Unreliable
L	0.9955	F	0.0045	221.222222222222	
T	0.3038	K	0.224812	1.35135135135135	Unreliable
L	0.530968	P	0.285912	1.85710288480372	
E	0.9207	D	0.0594	15.5	
E	0.40158	Q	0.36666	1.0952380952381	Unreliable
A	0.79083	P	0.07272	10.875	
Y	1	A	0	9999	
R	0.935371	H	0.022989	40.6877637130802	
D	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
R	1.01	A	0	9999	
E	1	A	0	9999	
F	0.9604	L	0.0196	49	
L	0.6412	F	0.3588	1.78706800445931	
T	0.7372	S	0.133016	5.54219041318338	
G	1	A	0	9999	
Q	0.449036	X	0.141228	3.1795111450987	
	0	-	0	0
G	1	A	0	9999	
E	0.99	A	0	9999	
T	0.819918	S	0.05148	15.9269230769231	
R	0.48	H	0.4165	1.15246098439376	Unreliable
Q	0.7007	E	0.1274	5.5	
V	0.5	L	0.3744	1.33547008547009	Unreliable
Y	0.21607	N	0.18819	1.14814814814815	Unreliable
E	0.8712	Q	0.0693	12.5714285714286	
G	1	A	0	9999	
Q	0.98	H	0.02	49	
V	0.92	M	0.0656	14.0243902439024	
V	0.65	A	0.35	1.85714285714286	
I	1	A	0	9999	
F	0.99	A	0	9999	
E	0.58	D	0.42	1.38095238095238	Unreliable
N	1	A	0	9999	
D	0.4356	H	0.2475	1.76	
E	0.96	K	0.04	24	
A	0.99	R	0	9999	
Y	0.99	H	0.01	99	
R	1	A	0	9999	
F	1	A	0	9999	
H	0.194832	L	0.19008	1.025	Unreliable
G	0.95	S	0.0384	24.7395833333333	
D	0.8633	N	0.1067	8.09090909090909	
N	0.5544	D	0.4257	1.30232558139535	Unreliable
R	0.3564	P	0.297	1.2	Unreliable
V	1	A	0	9999	
	0	-	0	0
	0	-	0	0
R	0.709786	K	0.209714	3.38454275823264	
K	1	A	0	9999	
V	1	A	0	9999	
V	0.9999	M	0.0095	105.252631578947	
L	1.01	A	0	9999	
K	0.9801	N	0.0099	99	
V	0.99	A	0	9999	
T	0.99	A	0	9999	
I	0.82	V	0.1818	4.51045104510451	
E	1	A	0	9999	
D	0.99	A	0	9999	
G	1	A	0	9999	
Y	1	A	0	9999	
F	0.99	A	0	9999	
L	0.9978	F	0.0022	453.545454545455	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MIVLDNLEQFKLVYRDGRKWNRCVEAINNIDNIKDGVTHSIGDSLVYRVEDGTTKPTALFEGNRRYFDVHYYLEGQETVEFADKAELTLEEAYRDETDREFLTGQ-GETRQVYEGQVVIFENDEAYRFHGDNRV--RKVVLKVTIEDGYFLNKX

The most probable ancestral protein sequence without gaps is:
MIVLDNLEQFKLVYRDGRKWNRCVEAINNIDNIKDGVTHSIGDSLVYRVEDGTTKPTALFEGNRRYFDVHYYLEGQETVEFADKAELTLEEAYRDETDREFLTGQGETRQVYEGQVVIFENDEAYRFHGDNRVRKVVLKVTIEDGYFLNKX

The accuracy score for that sequence is 0.852272754966887

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 8.18586679278221e-15
The natural log of that probability is -32.436367289538.

